STRINGSTRING
Psed_6254 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6254" - LuxR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6254LuxR family transcriptional regulator (542 aa)    
Predicted Functional Partners:
Psed_6255
FAD-dependent pyridine nucleotide-disulfide oxidoreductase (370 aa)
 
          0.909
Psed_0841
Hypothetical protein (121 aa)
   
          0.570
Psed_2423
Polyketide cyclase/dehydrase (149 aa)
   
          0.503
Psed_6407
Hypothetical protein (203 aa)
   
          0.490
Psed_2611
ATPase AAA (743 aa)
   
          0.470
Psed_3437
Hypothetical protein (65 aa)
   
          0.459
Psed_5109
Hypothetical protein (288 aa)
   
          0.451
Psed_6256
Hypothetical protein (145 aa)
              0.450
Psed_1792
LysR family transcriptional regulator (386 aa)
   
          0.425
Psed_3091
Transcriptional activator domain-containing protein (850 aa)
   
          0.409
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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