STRINGSTRING
Psed_6257 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6257" - Ribonuclease BN in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6257Ribonuclease BN (301 aa)    
Predicted Functional Partners:
Psed_1793
Amino acid-binding ACT domain-containing protein (219 aa)
   
          0.625
Psed_6256
Hypothetical protein (145 aa)
              0.605
Psed_6674
Hypothetical protein (784 aa)
   
          0.574
tatB
Sec-independent protein translocase tatB-like protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation (143 aa)
   
          0.572
Psed_4793
Hypothetical protein (191 aa)
   
          0.562
Psed_1068
Hypothetical protein (417 aa)
   
          0.531
Psed_5372
Dienelactone hydrolase-like protein (276 aa)
   
          0.502
Psed_6680
Cell wall hydrolase/autolysin (388 aa)
   
          0.496
Psed_1975
Hypothetical protein (136 aa)
   
          0.494
Psed_1086
Hypothetical protein (250 aa)
   
          0.494
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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