STRINGSTRING
Psed_6265 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6265" - ABC transporter permease in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6265ABC transporter permease (270 aa)    
Predicted Functional Partners:
Psed_6266
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein (393 aa)
 
   
  0.951
Psed_5045
Taurine-transporting AtPase (285 aa)
   
  0.889
Psed_5964
Taurine-transporting AtPase (263 aa)
   
  0.888
Psed_3014
Taurine-transporting AtPase (256 aa)
   
  0.887
Psed_4191
Taurine-transporting AtPase (276 aa)
   
  0.886
Psed_4511
Taurine-transporting AtPase (266 aa)
   
  0.885
Psed_6268
acyl-CoA dehydrogenase (346 aa)
 
        0.877
Psed_6269
Hypothetical protein (180 aa)
 
          0.819
Psed_6267
Sulfate-transporting ATPase (249 aa)
     
  0.787
Psed_3013
ABC transporter permease (280 aa)
 
          0.776
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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