STRINGSTRING
Psed_6272 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6272" - Integral membrane protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6272Integral membrane protein (364 aa)    
Predicted Functional Partners:
Psed_4863
Hypothetical protein (284 aa)
   
          0.745
Psed_1815
DoxX family protein (198 aa)
   
          0.611
Psed_0897
Septum formation initiator (171 aa)
   
          0.500
Psed_4215
Pyridoxamine 5’-phosphate oxidase-related FMN-binding protein (185 aa)
   
          0.448
Psed_6271
Hypothetical protein (377 aa)
              0.442
Psed_3626
F420-dependent protein (136 aa)
   
          0.439
Psed_3174
Hypothetical protein (219 aa)
   
          0.435
Psed_4295
Hypothetical protein (266 aa)
   
          0.432
Psed_0705
UspA domain-containing protein (294 aa)
   
          0.411
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (12%) [HD]