STRINGSTRING
Psed_6276 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6276" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6276Hypothetical protein (469 aa)    
Predicted Functional Partners:
Psed_6280
Protein FdrA (513 aa)
   
  0.987
Psed_6240
Carbamate kinase (325 aa)
 
   
  0.850
Psed_6281
Carbamate kinase (325 aa)
 
   
  0.846
Psed_6275
TetR family transcriptional regulator (212 aa)
              0.603
Psed_6274
AMP-dependent synthetase/ligase (494 aa)
              0.523
Psed_1191
Xanthine/uracil/vitamin C permease (562 aa)
 
          0.493
Psed_6328
Malate dehydrogenase (387 aa)
 
          0.485
Psed_6277
Hypothetical protein (170 aa)
              0.476
Psed_5331
succinyl-CoA synthetase subunit alpha (295 aa)
   
   
  0.431
Psed_5383
Cytosine deaminase (427 aa)
 
          0.416
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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