STRINGSTRING
Psed_6290 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6290" - Dienelactone hydrolase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6290Dienelactone hydrolase (250 aa)    
Predicted Functional Partners:
Psed_6035
Dienelactone hydrolase (247 aa)
   
   
    0.952
Psed_6064
Muconate and chloromuconate cycloisomerase (373 aa)
     
 
  0.911
Psed_3094
Muconate and chloromuconate cycloisomerase (373 aa)
     
 
  0.911
Psed_0821
Muconate and chloromuconate cycloisomerase (373 aa)
     
 
  0.911
Psed_4969
Hydroxyquinol 1,2-dioxygenase (287 aa)
   
 
  0.907
Psed_2280
Hydroxyquinol 1,2-dioxygenase (274 aa)
   
 
  0.907
Psed_6289
Hypothetical protein (85 aa)
              0.881
Psed_0235
Dienelactone hydrolase (234 aa)
   
   
 
0.855
Psed_6301
Dienelactone hydrolase (247 aa)
   
   
 
0.855
Psed_6293
isovaleryl-CoA dehydrogenase (416 aa)
              0.662
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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