STRINGSTRING
Psed_6295 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6295" - LmbE family protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6295LmbE family protein (241 aa)    
Predicted Functional Partners:
Psed_6296
Hypothetical protein (367 aa)
              0.859
Psed_6297
HxlR family transcriptional regulator (152 aa)
              0.676
Psed_1081
Hypothetical protein (326 aa)
   
          0.627
Psed_6279
Group 1 glycosyl transferase (394 aa)
   
 
  0.581
mshA
D-inositol-3-phosphate glycosyltransferase; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2- acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway (457 aa)
   
 
  0.581
Psed_5573
Group 1 glycosyl transferase (397 aa)
   
 
  0.581
Psed_5572
Group 1 glycosyl transferase (390 aa)
   
 
  0.581
Psed_3663
Group 1 glycosyl transferase (373 aa)
   
 
  0.581
Psed_3609
Phosphatidylinositol alpha-mannosyltransferase (396 aa)
   
 
  0.581
Psed_3514
Group 1 glycosyl transferase (359 aa)
   
 
  0.581
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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