STRINGSTRING
Psed_6300 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6300" - Cupin in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6300Cupin (168 aa)    
Predicted Functional Partners:
Psed_0926
Cupin (151 aa)
   
          0.765
Psed_6299
LuxR family transcriptional regulator (932 aa)
              0.616
Psed_3901
Hypothetical protein (154 aa)
   
          0.523
Psed_3193
Cupin (158 aa)
   
          0.506
Psed_3438
Cupin (154 aa)
   
          0.437
Psed_0338
Hypothetical protein (243 aa)
   
          0.426
Psed_3108
Hypothetical protein (233 aa)
   
          0.419
Psed_5873
Transcriptional regulator CdaR (409 aa)
   
          0.403
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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