STRINGSTRING
Psed_6311 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6311" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6311Hypothetical protein (146 aa)    
Predicted Functional Partners:
Psed_6310
PadR family transcriptional regulator (196 aa)
 
          0.728
Psed_3903
Hypothetical protein (131 aa)
   
          0.678
Psed_1931
AraC family transcriptional regulator (254 aa)
   
          0.623
Psed_3253
PadR-like family transcriptional regulator (206 aa)
   
          0.583
Psed_5223
Sporulation-associated protein (385 aa)
   
          0.550
Psed_5036
Polyketide cyclase/dehydrase (148 aa)
   
          0.487
Psed_0184
Hypothetical protein (701 aa)
   
          0.487
Psed_3002
TetR family transcriptional regulator (141 aa)
   
          0.485
Psed_3111
Hemerythrin HHE cation binding domain-containing protein (199 aa)
   
          0.480
Psed_0558
Major facilitator superfamily protein (395 aa)
   
          0.474
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (10%) [HD]