STRINGSTRING
Psed_6316 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6316" - LuxR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6316LuxR family transcriptional regulator (355 aa)    
Predicted Functional Partners:
Psed_6318
Amidohydrolase (366 aa)
 
          0.717
Psed_6146
Alpha/beta hydrolase (275 aa)
   
          0.716
Psed_6465
Alpha/beta hydrolase (271 aa)
   
          0.705
Psed_6317
Amidohydrolase (519 aa)
 
          0.700
Psed_6319
Rieske (2Fe-2S) domain-containing protein (145 aa)
 
          0.698
Psed_5284
Alpha/beta hydrolase (272 aa)
   
          0.683
Psed_4327
Alpha/beta hydrolase (286 aa)
   
          0.674
Psed_2440
Alpha/beta hydrolase (270 aa)
   
          0.642
Psed_0344
Alpha/beta hydrolase (253 aa)
   
          0.632
Psed_6320
AraC family transcriptional regulator (154 aa)
              0.629
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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