STRINGSTRING
Psed_6317 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6317" - Amidohydrolase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6317Amidohydrolase (519 aa)    
Predicted Functional Partners:
Psed_6319
Rieske (2Fe-2S) domain-containing protein (145 aa)
 
     
  0.977
Psed_6318
Amidohydrolase (366 aa)
 
       
0.879
Psed_2475
Rieske (2Fe-2S) domain-containing protein (121 aa)
 
     
  0.867
Psed_2582
Rieske (2Fe-2S) domain-containing protein (131 aa)
 
     
  0.858
Psed_6320
AraC family transcriptional regulator (154 aa)
              0.834
Psed_6321
Glyoxalase/bleomycin resistance protein/dioxygenase (142 aa)
   
        0.828
Psed_3222
Amidohydrolase (412 aa)
 
          0.755
Psed_6316
LuxR family transcriptional regulator (355 aa)
 
          0.700
Psed_3216
Luciferase-like protein (429 aa)
 
        0.530
Psed_1369
Luciferase-like protein (433 aa)
 
        0.502
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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