STRINGSTRING
Psed_6331 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6331" - LuxR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6331LuxR family transcriptional regulator (431 aa)    
Predicted Functional Partners:
Psed_1361
3-oxoacyl-ACP reductase (305 aa)
   
          0.776
Psed_3224
3-oxoacyl-ACP reductase (305 aa)
   
          0.775
Psed_3118
3-oxoacyl-ACP reductase (270 aa)
 
     
  0.774
Psed_0219
3-oxoacyl-ACP reductase (244 aa)
 
          0.773
Psed_0160
3-oxoacyl-ACP reductase (311 aa)
 
          0.770
Psed_5501
Short-chain dehydrogenase/reductase SDR (263 aa)
   
          0.766
Psed_3992
3-oxoacyl-ACP reductase (251 aa)
 
          0.760
Psed_1479
3-oxoacyl-ACP reductase (251 aa)
 
          0.751
Psed_2924
3-oxoacyl-ACP reductase (296 aa)
 
          0.745
Psed_5512
3-oxoacyl-ACP reductase (237 aa)
   
          0.736
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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