STRINGSTRING
Psed_6376 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6376" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6376Hypothetical protein (248 aa)    
Predicted Functional Partners:
Psed_6375
Hydrogenase expression/formation protein HypD (376 aa)
              0.881
Psed_6377
Hypothetical protein (287 aa)
              0.859
Psed_6374
Hydrogenase assembly chaperone HypC/HupF (90 aa)
              0.761
Psed_6370
Hydrogenase assembly chaperone HypC/HupF (86 aa)
              0.742
Psed_6373
Hydrogenase expression/formation protein HypE (369 aa)
              0.742
Psed_6369
(NiFe) hydrogenase maturation protein HypF (779 aa)
              0.733
Psed_6367
Nitrogen-fixing NifU domain-containing protein (306 aa)
              0.729
Psed_6371
Hydrogenase expression/formation protein HupF/HypC (241 aa)
              0.724
Psed_6372
Sugar phosphate isomerase (224 aa)
              0.723
Psed_6368
NHL repeat containing protein (400 aa)
              0.712
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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