STRINGSTRING
Psed_6352 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6352" - Plasmid pRiA4b ORF-3 family protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6352Plasmid pRiA4b ORF-3 family protein (197 aa)    
Predicted Functional Partners:
Psed_6383
Transposase IS4 family protein (297 aa)
              0.626
Psed_1398
Integrase catalytic subunit (369 aa)
 
          0.444
Psed_1394
Integrase catalytic subunit (367 aa)
 
          0.424
Psed_5961
Integrase catalytic subunit (367 aa)
 
          0.424
Psed_4885
Integrase catalytic subunit (367 aa)
 
          0.424
Psed_1394
Integrase catalytic subunit (367 aa)
 
          0.424
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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