STRINGSTRING
Psed_6409 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6409" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6409Hypothetical protein (316 aa)    
Predicted Functional Partners:
Psed_6410
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin (219 aa)
              0.859
Psed_5108
Hypothetical protein (182 aa)
   
          0.756
Psed_6412
Histidine kinase (364 aa)
 
          0.744
Psed_6411
Winged helix family two component transcriptional regulator (243 aa)
              0.641
Psed_0645
Cupin (107 aa)
   
          0.617
Psed_4531
Hypothetical protein (195 aa)
   
          0.576
Psed_5928
Hypothetical protein (164 aa)
   
          0.572
Psed_2820
Hypothetical protein (273 aa)
   
          0.572
Psed_5496
MerR family transcriptional regulator (116 aa)
   
          0.560
Psed_1763
Molybdopterin dehydrogenase FAD-binding protein (290 aa)
 
          0.556
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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