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Psed_6410 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6410" - Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6410Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin (219 aa)    
Predicted Functional Partners:
Psed_6409
Hypothetical protein (316 aa)
              0.859
Psed_6412
Histidine kinase (364 aa)
 
          0.853
Psed_6411
Winged helix family two component transcriptional regulator (243 aa)
 
          0.781
Psed_2950
Hypothetical protein (389 aa)
   
          0.677
Psed_5472
LuxR family transcriptional regulator (1033 aa)
   
          0.602
Psed_4444
Alpha/beta hydrolase (263 aa)
   
          0.586
Psed_3790
Luciferase-like protein (474 aa)
   
          0.578
Psed_6570
ABC transporter (255 aa)
   
          0.568
Psed_4912
LuxR family transcriptional regulator (917 aa)
 
          0.561
Psed_2014
Alpha/beta hydrolase (251 aa)
   
          0.557
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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