STRINGSTRING
Psed_6411 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6411" - Winged helix family two component transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6411Winged helix family two component transcriptional regulator (243 aa)    
Predicted Functional Partners:
Psed_6412
Histidine kinase (364 aa)
 
   
  0.995
Psed_2890
Histidine kinase (393 aa)
     
  0.880
Psed_6410
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin (219 aa)
 
          0.781
Psed_0995
Histidine kinase (439 aa)
          0.745
Psed_5142
Histidine kinase (492 aa)
 
          0.659
Psed_6409
Hypothetical protein (316 aa)
              0.641
Psed_1868
Histidine kinase (451 aa)
   
          0.637
Psed_0748
Histidine kinase (409 aa)
   
          0.633
Psed_4829
Histidine kinase (443 aa)
   
          0.626
Psed_6021
Histidine kinase (461 aa)
          0.616
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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