STRINGSTRING
Psed_6436 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6436" - Transcriptional activator domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6436Transcriptional activator domain-containing protein (986 aa)    
Predicted Functional Partners:
Psed_6435
(R)-6-hydroxynicotine oxidase (466 aa)
 
          0.706
Psed_3245
ATPase-like protein (1005 aa)
   
          0.631
Psed_6437
LuxR family transcriptional regulator (369 aa)
 
          0.576
Psed_6343
Hypothetical protein (425 aa)
   
          0.547
Psed_6053
Hypothetical protein (160 aa)
   
          0.543
Psed_6451
Hypothetical protein (420 aa)
   
          0.515
Psed_4257
LuxR family transcriptional regulator (870 aa)
   
          0.498
Psed_6439
Alpha/beta hydrolase (355 aa)
 
          0.486
Psed_4256
LuxR family transcriptional regulator (852 aa)
   
          0.444
Psed_6341
Glyoxalase/bleomycin resistance protein/dioxygenase (214 aa)
   
          0.431
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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