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Psed_6438 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6438" - Hemerythrin HHE cation binding domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6438Hemerythrin HHE cation binding domain-containing protein (279 aa)    
Predicted Functional Partners:
Psed_6437
LuxR family transcriptional regulator (369 aa)
 
          0.854
Psed_1465
LuxR family transcriptional regulator (387 aa)
 
          0.737
Psed_6439
Alpha/beta hydrolase (355 aa)
 
          0.731
Psed_1999
Winged helix family transcriptional regulator (1107 aa)
   
          0.718
Psed_6195
TetR family transcriptional regulator (224 aa)
   
          0.651
Psed_0719
TetR family transcriptional regulator (197 aa)
   
          0.646
Psed_2532
TetR family transcriptional regulator (207 aa)
 
          0.636
Psed_0888
Transposase IS4 family protein (466 aa)
   
          0.612
Psed_5889
LuxR family transcriptional regulator (899 aa)
   
          0.555
Psed_6178
Hypothetical protein (202 aa)
   
          0.544
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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