STRINGSTRING
Psed_6439 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6439" - Alpha/beta hydrolase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6439Alpha/beta hydrolase (355 aa)    
Predicted Functional Partners:
Psed_6438
Hemerythrin HHE cation binding domain-containing protein (279 aa)
 
          0.731
Psed_3109
Hypothetical protein (263 aa)
   
          0.598
Psed_6371
Hydrogenase expression/formation protein HupF/HypC (241 aa)
   
          0.574
Psed_5579
MOSC domain-containing protein beta barrel domain-containing protein (282 aa)
   
          0.553
Psed_3108
Hypothetical protein (233 aa)
   
          0.527
Psed_6437
LuxR family transcriptional regulator (369 aa)
              0.491
Psed_5958
Agarase (371 aa)
   
          0.490
Psed_6436
Transcriptional activator domain-containing protein (986 aa)
 
          0.486
Psed_3111
Hemerythrin HHE cation binding domain-containing protein (199 aa)
   
          0.453
Psed_4023
SARP family transcriptional regulator (568 aa)
   
          0.449
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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