STRINGSTRING
Psed_6441 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6441" - Beta-lactamase in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6441Beta-lactamase (400 aa)    
Predicted Functional Partners:
Psed_6306
Beta-lactamase (649 aa)
   
          0.765
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA (733 aa)
     
      0.607
Psed_1572
Glycoside hydrolase protein (409 aa)
     
  0.539
Psed_2645
Hypothetical protein (316 aa)
   
          0.475
Psed_2233
Cyclohexanone monooxygenase (547 aa)
 
        0.460
Psed_5981
Cyclopentanone monooxygenase (546 aa)
 
        0.458
Psed_6442
Aminoglycoside phosphotransferase (338 aa)
              0.448
Psed_2150
NIPSNAP family containing protein (112 aa)
   
          0.441
Psed_1177
NIPSNAP family containing protein (107 aa)
   
          0.438
Psed_0488
Cyclohexanone monooxygenase (536 aa)
 
        0.413
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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