STRINGSTRING
Psed_6457 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6457" - GntR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6457GntR family transcriptional regulator (245 aa)    
Predicted Functional Partners:
Psed_3671
GntR family transcriptional regulator (250 aa)
   
          0.778
Psed_1543
GntR family transcriptional regulator (259 aa)
   
   
  0.718
Psed_0346
GntR family transcriptional regulator (220 aa)
   
          0.691
Psed_6460
Carboxymuconolactone decarboxylase (128 aa)
         
  0.627
Psed_6458
Succinate-semialdehyde dehydrogenase (NAD(P)(+)) (458 aa)
   
   
  0.596
Psed_2753
GntR family transcriptional regulator (261 aa)
   
   
  0.550
Psed_6465
Alpha/beta hydrolase (271 aa)
   
        0.523
Psed_0684
GntR family transcriptional regulator (260 aa)
   
   
  0.518
Psed_3766
GntR family transcriptional regulator (233 aa)
   
   
  0.510
Psed_0098
GntR family transcriptional regulator (249 aa)
   
   
  0.500
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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