STRINGSTRING
Psed_6480 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6480" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6480Hypothetical protein (145 aa)    
Predicted Functional Partners:
Psed_1688
ATP/cobalamin adenosyltransferase (200 aa)
 
   
  0.909
Psed_6481
3-oxoacyl-ACP reductase (389 aa)
              0.762
Psed_2089
Microcompartments protein (109 aa)
 
   
  0.751
Psed_2082
Microcompartments protein (97 aa)
 
   
  0.749
Psed_2087
Ethanolamine utilization protein EutJ family protein (288 aa)
 
   
  0.724
Psed_6479
Luciferase-like protein (391 aa)
              0.716
Psed_2528
Catechol 2,3 dioxygenase (309 aa)
 
          0.555
Psed_2527
Catechol 2,3 dioxygenase (304 aa)
 
          0.549
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA (733 aa)
   
        0.537
Psed_2088
Acetaldehyde dehydrogenase (462 aa)
 
   
  0.535
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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