STRINGSTRING
Psed_6487 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6487" - Transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6487Transcriptional regulator (568 aa)    
Predicted Functional Partners:
Psed_4771
ATP-dependent DNA helicase RecG (748 aa)
       
    0.802
Psed_4811
N-6 DNA methylase (585 aa)
   
   
  0.533
Psed_3630
SNF2-like protein (1053 aa)
 
          0.523
Psed_6486
Hypothetical protein (1355 aa)
              0.508
Psed_6485
Hypothetical protein (494 aa)
              0.506
Psed_6484
Hypothetical protein (374 aa)
              0.506
Psed_6483
Hypothetical protein (401 aa)
              0.506
Psed_6330
Helicase (716 aa)
              0.412
Psed_3658
ECF subfamily RNA polymerase sigma-24 subunit (348 aa)
 
          0.401
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (8%) [HD]