STRINGSTRING
Psed_6507 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6507" - Crp/Fnr family transcriptional regulator in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6507Crp/Fnr family transcriptional regulator (224 aa)    
Predicted Functional Partners:
Psed_6171
Guanylate cyclase (495 aa)
 
  0.953
Psed_3392
Guanylate cyclase (315 aa)
 
  0.922
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (92 aa)
   
 
 
  0.840
Psed_5075
MIP family channel protein (272 aa)
   
 
  0.837
Psed_2223
MIP family channel protein (286 aa)
   
 
  0.837
Psed_2045
Major intrinsic protein (290 aa)
   
 
  0.837
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (347 aa)
 
 
  0.828
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (299 aa)
 
        0.801
Psed_4066
Type III restriction protein res subunit (1028 aa)
   
 
    0.795
Psed_5723
Type III restriction protein res subunit (553 aa)
   
 
    0.795
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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