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Psed_6524 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6524" - ECF subfamily RNA polymerase sigma-24 subunit in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6524ECF subfamily RNA polymerase sigma-24 subunit (244 aa)    
Predicted Functional Partners:
Psed_6525
Hypothetical protein (139 aa)
              0.745
Psed_6676
ECF subfamily RNA polymerase sigma-24 subunit (182 aa)
   
          0.720
Psed_4275
ECF subfamily RNA polymerase sigma-24 subunit (224 aa)
   
          0.666
Psed_6526
Hypothetical protein (228 aa)
              0.665
Psed_1028
ECF subfamily RNA polymerase sigma-24 subunit (221 aa)
   
          0.654
Psed_6523
Fructose-bisphosphate aldolase (343 aa)
              0.640
Psed_5354
ECF subfamily RNA polymerase sigma-24 subunit (190 aa)
   
          0.622
Psed_0291
ECF subfamily RNA polymerase sigma-24 subunit (203 aa)
   
          0.599
Psed_1308
ECF subfamily RNA polymerase sigma-24 subunit (181 aa)
   
          0.579
Psed_6527
Hypothetical protein (285 aa)
              0.552
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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