STRINGSTRING
Psed_6526 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6526" - Hypothetical protein in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6526Hypothetical protein (228 aa)    
Predicted Functional Partners:
Psed_6527
Hypothetical protein (285 aa)
 
       
0.790
Psed_6525
Hypothetical protein (139 aa)
              0.759
Psed_6524
ECF subfamily RNA polymerase sigma-24 subunit (244 aa)
              0.665
Psed_6523
Fructose-bisphosphate aldolase (343 aa)
              0.609
Psed_3784
NAD(+) synthase (680 aa)
   
      0.534
Psed_3588
DNA polymerase I (939 aa)
   
 
  0.468
Psed_0525
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (761 aa)
   
        0.449
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) (331 aa)
         
  0.436
Psed_3641
Shikimate dehydrogenase substrate binding domain-containing protein (300 aa)
         
  0.402
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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