STRINGSTRING
Psed_6534 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6534" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6534Hypothetical protein (120 aa)    
Predicted Functional Partners:
Psed_6533
Extradiol ring-cleavage dioxygenase class III protein subunit B (288 aa)
              0.875
Psed_6532
Citrate synthase (271 aa)
              0.871
Psed_6535
Alcohol dehydrogenase (323 aa)
              0.865
Psed_6531
formyl-CoA transferase (393 aa)
              0.864
Psed_6530
IclR family transcriptional regulator (267 aa)
              0.658
Psed_6529
S-adenosylhomocysteine deaminase (483 aa)
              0.444
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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