STRINGSTRING
Psed_6574 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6574" - Tetracycline repressor in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6574Tetracycline repressor (204 aa)    
Predicted Functional Partners:
Psed_6575
Hypothetical protein (151 aa)
 
          0.864
Psed_6576
ATP-binding membrane protein (198 aa)
         
  0.794
Psed_6573
Monooxygenase FAD-binding protein (359 aa)
 
          0.702
Psed_3002
TetR family transcriptional regulator (141 aa)
   
          0.699
Psed_2489
Hypothetical protein (351 aa)
   
          0.530
Psed_2344
Hemerythrin HHE cation binding domain-containing protein (192 aa)
   
          0.508
Psed_2490
TetR family transcriptional regulator (215 aa)
   
          0.472
Psed_4716
Regulatory protein MarR (145 aa)
   
          0.454
Psed_5646
Heat shock protein 90 (997 aa)
   
          0.448
Psed_4140
Winged helix family transcriptional regulator (992 aa)
   
          0.442
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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