STRINGSTRING
Psed_6586 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6586" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6586Hypothetical protein (521 aa)    
Predicted Functional Partners:
Psed_6587
Transglycosylase-like domain-containing protein (582 aa)
              0.859
Psed_1876
O-antigen polymerase (674 aa)
 
          0.782
Psed_6588
Chromosome partitioning ATPase (554 aa)
              0.779
Psed_6585
Hypothetical protein (248 aa)
              0.748
Psed_1872
Group 1 glycosyl transferase (391 aa)
   
          0.706
Psed_5859
Group 1 glycosyl transferase (388 aa)
   
          0.614
Psed_4063
Trehalose synthase (741 aa)
   
          0.579
Psed_2296
Hypothetical protein (155 aa)
   
          0.554
Psed_2047
Hypothetical protein (330 aa)
   
          0.552
Psed_3948
Integrase protein (362 aa)
   
          0.540
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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