STRINGSTRING
Psed_6598 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6598" - LuxR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6598LuxR family transcriptional regulator (935 aa)    
Predicted Functional Partners:
Psed_6595
GTP-binding protein HSR1-like protein (499 aa)
 
          0.787
Psed_6594
Hypothetical protein (621 aa)
 
          0.786
Psed_4077
Hypothetical protein (393 aa)
 
          0.777
Psed_4747
Abortive infection protein (391 aa)
 
          0.764
Psed_6542
Hypothetical protein (220 aa)
   
          0.712
Psed_3358
Hypothetical protein (265 aa)
   
          0.705
Psed_0165
Hypothetical protein (294 aa)
   
          0.705
Psed_4476
Hypothetical protein (131 aa)
   
          0.704
Psed_5297
Hypothetical protein (358 aa)
   
          0.702
Psed_0164
Hypothetical protein (275 aa)
   
          0.661
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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