STRINGSTRING
Psed_6620 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6620" - Esterase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6620Esterase (258 aa)    
Predicted Functional Partners:
Psed_6621
Type 11 helix-turn-helix protein (318 aa)
 
          0.773
Psed_4244
Alpha/beta hydrolase (241 aa)
   
          0.742
Psed_4290
Alpha/beta hydrolase (234 aa)
   
          0.669
Psed_0072
Hypothetical protein (234 aa)
   
          0.664
Psed_0569
TetR family transcriptional regulator (206 aa)
   
          0.549
pckG
Phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle (607 aa)
              0.481
Psed_6627
TetR family transcriptional regulator (244 aa)
   
          0.431
Psed_6617
Na+/solute symporter (563 aa)
 
          0.426
Psed_0121
Hypothetical protein (207 aa)
   
          0.413
Psed_2269
Helix-turn-helix type 11 domain-containing protein (346 aa)
 
          0.408
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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