STRINGSTRING
Psed_6631 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6631" - Peptidase U62 in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6631Peptidase U62 (504 aa)    
Predicted Functional Partners:
Psed_6630
Peptidase U62 (471 aa)
 
        0.973
Psed_6633
Hypothetical protein (267 aa)
              0.724
Psed_6632
Hypothetical protein (117 aa)
              0.724
Psed_6634
Hypothetical protein (718 aa)
              0.546
Psed_2718
Hypothetical protein (149 aa)
   
          0.538
Psed_3784
NAD(+) synthase (680 aa)
   
   
  0.523
sigA
RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (461 aa)
     
      0.482
Psed_2978
RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (348 aa)
     
      0.482
Psed_6629
Hypothetical protein (101 aa)
              0.468
Psed_2139
Pirin (255 aa)
   
          0.450
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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