STRINGSTRING
Psed_6646 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6646" - Hypothetical protein in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Psed_6646Hypothetical protein (493 aa)    
Predicted Functional Partners:
Psed_0113
Glutamine amidotransferase of anthranilate synthase (213 aa)
   
      0.653
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5’-phosphoribosyl)-anthranilate (PRA) (370 aa)
     
      0.634
Psed_6649
3-oxoadipate enol-lactonase (260 aa)
              0.615
Psed_6648
3-oxoadipate CoA-transferase (267 aa)
              0.601
Psed_6647
3-oxoadipate CoA-transferase (256 aa)
              0.601
Psed_0574
Polysaccharide deacetylase (735 aa)
              0.507
Psed_0571
Polysaccharide deacetylase (899 aa)
              0.507
dnaA
Chromosome replication initiator DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (555 aa)
   
        0.430
fpg
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3’- and 5’-phosphates (298 aa)
 
          0.424
Psed_3542
Holliday junction resolvase; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (149 aa)
         
  0.418
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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