STRINGSTRING
Psed_6656 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6656" - Deoxyribonuclease IV in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6656Deoxyribonuclease IV (256 aa)    
Predicted Functional Partners:
Psed_6657
Integral membrane protein (473 aa)
 
          0.895
Psed_3588
DNA polymerase I (939 aa)
   
 
  0.686
Psed_6107
HhH-GPD family protein (294 aa)
     
   
  0.683
Psed_3534
Peptidase M24 (362 aa)
 
   
  0.679
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (299 aa)
   
 
  0.653
Psed_3282
Peptidase M24 (376 aa)
 
   
  0.649
Psed_6654
Single-strand binding protein (175 aa)
   
 
  0.577
Psed_2932
NGG1p interacting factor 3 protein, NIF3 (383 aa)
              0.569
Psed_2758
Hypothetical protein (182 aa)
 
          0.562
sigA
RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (461 aa)
         
  0.535
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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