STRINGSTRING
Psed_6670 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6670" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6670Hypothetical protein (201 aa)    
Predicted Functional Partners:
Psed_6671
Major facilitator superfamily protein (452 aa)
   
        0.690
Psed_3542
Holliday junction resolvase; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (149 aa)
   
   
  0.572
Psed_1783
vitamin-B12 independent methionine synthase (421 aa)
   
          0.550
Psed_1687
Hypothetical protein (145 aa)
   
          0.542
Psed_4492
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (248 aa)
   
 
  0.485
Psed_5300
Serine-type D-Ala-D-Ala carboxypeptidase (411 aa)
   
        0.458
Psed_0174
Phosphoesterase PA-phosphatase-like protein (215 aa)
   
          0.433
pyrB
Aspartate carbamoyltransferase (314 aa)
   
        0.426
Psed_1912
Hypothetical protein (257 aa)
   
          0.421
Psed_5450
Fe(3+)-transporting ATPase (355 aa)
 
          0.413
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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