STRINGSTRING
Psed_6677 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6677" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6677Hypothetical protein (552 aa)    
Predicted Functional Partners:
Psed_6676
ECF subfamily RNA polymerase sigma-24 subunit (182 aa)
              0.861
Psed_1449
Acetolactate synthase (578 aa)
 
     
  0.688
Psed_6675
Hypothetical protein (568 aa)
              0.644
Psed_2513
HAD-superfamily hydrolase (218 aa)
 
        0.615
Psed_6678
Thioredoxin reductase (332 aa)
   
        0.592
Psed_3088
Coenzyme F420-dependent NADP oxidoreductase (226 aa)
   
          0.555
Psed_6477
Peptidase M10A and M12B matrixin and adamalysin (500 aa)
   
          0.548
rplQ
50S ribosomal protein L17 (245 aa)
   
        0.509
Psed_5486
BAAT/acyl-CoA thioester hydrolase (287 aa)
   
        0.493
Psed_6505
Beta-lactamase domain-containing protein (265 aa)
   
      0.465
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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