STRINGSTRING
Psed_6681 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6681" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6681Hypothetical protein (214 aa)    
Predicted Functional Partners:
Psed_6682
GntR family transcriptional regulator (501 aa)
              0.735
Psed_2715
Sporulation and cell division protein SsgA (136 aa)
   
          0.730
Psed_5274
AIG2 family protein (149 aa)
   
          0.721
Psed_2038
Sporulation and cell division protein SsgA (139 aa)
   
          0.719
Psed_5352
Hypothetical protein (126 aa)
   
          0.690
Psed_1118
ABC transporter (456 aa)
   
          0.672
Psed_3529
Helix-turn-helix domain-containing protein (162 aa)
   
          0.662
Psed_5108
Hypothetical protein (182 aa)
   
          0.645
Psed_6683
D-alanine--D-alanine ligase; Cell wall formation (315 aa)
              0.635
Psed_5199
Hypothetical protein (368 aa)
   
          0.627
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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