STRINGSTRING
HMPREF9018_0006 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0006" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0006Uncharacterized protein (251 aa)    
Predicted Functional Partners:
HMPREF9018_0005
Uncharacterized protein (379 aa)
 
          0.963
HMPREF9018_2051
Sodium bile acid symporter family protein (322 aa)
   
          0.759
HMPREF9018_0336
OmpA family protein (344 aa)
   
          0.684
HMPREF9018_1659
Transporter, major facilitator family protein (438 aa)
 
          0.567
HMPREF9018_0757
Histidine acid phosphatase (429 aa)
   
          0.554
HMPREF9018_0756
Phosphate-selective porin O and P (384 aa)
   
          0.533
HMPREF9018_1189
OmpA family protein (360 aa)
   
          0.519
HMPREF9018_0350
Uncharacterized protein (258 aa)
   
          0.510
HMPREF9018_0961
Uncharacterized protein (132 aa)
   
          0.494
HMPREF9018_0328
Uncharacterized protein (116 aa)
   
          0.468
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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