STRINGSTRING
HMPREF9018_0013 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0013" - Transcriptional regulator, AraC family in Prevotella amnii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0013Transcriptional regulator, AraC family (155 aa)    
Predicted Functional Partners:
HMPREF9018_0011
Uncharacterized protein (205 aa)
              0.862
HMPREF9018_0012
Peptidase family M49 (658 aa)
              0.861
nadC
Nicotinate-nucleotide diphosphorylase (Carboxylating) (290 aa)
       
    0.731
HMPREF9018_0725
Uncharacterized protein (159 aa)
   
          0.675
nadB
L-aspartate oxidase ; Catalyzes the oxidation of L-aspartate to iminoaspartate (525 aa)
       
    0.670
HMPREF9018_0786
Uncharacterized protein (220 aa)
   
          0.638
HMPREF9018_0575
Uncharacterized protein (108 aa)
   
          0.615
HMPREF9018_0100
Uncharacterized protein (363 aa)
   
          0.545
HMPREF9018_1842
Uncharacterized protein (204 aa)
   
          0.495
HMPREF9018_1190
Lactase (1056 aa)
       
    0.477
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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