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rfbD protein (Prevotella amnii) - STRING interaction network
"rfbD" - dTDP-4-dehydrorhamnose reductase in Prevotella amnii
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbDdTDP-4-dehydrorhamnose reductase (289 aa)    
Predicted Functional Partners:
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase (184 aa)
 
  0.999
metK
Methionine adenosyltransferase ; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (430 aa)
     
  0.949
rfbB
dTDP-glucose 4,6-dehydratase (384 aa)
 
 
  0.945
rfbA
Glucose-1-phosphate thymidylyltransferase ; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis (292 aa)
 
  0.925
HMPREF9018_0515
NAD dependent epimerase/dehydratase family protein (350 aa)
   
  0.881
HMPREF9018_1643
NAD dependent epimerase/dehydratase family protein (319 aa)
   
  0.875
HMPREF9018_1071
NAD dependent epimerase/dehydratase family protein (332 aa)
   
  0.875
fcl
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase ; Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction (403 aa)
   
  0.875
HMPREF9018_0016
Uncharacterized protein (203 aa)
              0.844
HMPREF9018_1169
Polysaccharide biosynthesis protein (649 aa)
       
  0.833
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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