STRINGSTRING
HMPREF9018_0032 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0032" - PepSY domain protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0032PepSY domain protein (489 aa)    
Predicted Functional Partners:
HMPREF9018_0742
Uncharacterized protein (291 aa)
   
          0.777
HMPREF9018_0740
TonB-dependent receptor (783 aa)
   
          0.761
HMPREF9018_0741
Uncharacterized protein (234 aa)
   
          0.749
HMPREF9018_0188
Acyltransferase (353 aa)
   
          0.667
HMPREF9018_0183
Uncharacterized protein (477 aa)
   
          0.587
HMPREF9018_1707
Uncharacterized protein (508 aa)
   
          0.558
HMPREF9018_1625
Uncharacterized protein (130 aa)
   
          0.513
HMPREF9018_1845
Uncharacterized protein (175 aa)
   
          0.498
HMPREF9018_0113
Uncharacterized protein (200 aa)
   
          0.451
HMPREF9018_0003
Transporter, major facilitator family protein (391 aa)
   
          0.429
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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