STRINGSTRING
HMPREF9018_0034 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0034" - Metallo-beta-lactamase domain protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0034Metallo-beta-lactamase domain protein (267 aa)    
Predicted Functional Partners:
rnz
tRNase Z ; Zinc phosphodiesterase, which displays some tRNA 3’- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3’-trailer from precursor tRNA (304 aa)
   
 
  0.703
rnr
Ribonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (761 aa)
   
 
    0.673
HMPREF9018_1993
HDIG domain protein (474 aa)
       
    0.664
HMPREF9018_1645
Nucleotide sugar dehydrogenase (425 aa)
     
      0.587
polA
DNA-directed DNA polymerase (945 aa)
              0.568
HMPREF9018_0033
Uncharacterized protein (507 aa)
              0.471
HMPREF9018_0393
Peptidase Do (489 aa)
   
   
  0.458
HMPREF9018_2007
Response regulator receiver domain protein (228 aa)
         
  0.448
HMPREF9018_1507
Response regulator receiver domain protein (234 aa)
         
  0.448
HMPREF9018_0056
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (471 aa)
         
  0.447
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (8%) [HD]