STRINGSTRING
cbiX protein (Prevotella amnii) - STRING interaction network
"cbiX" - Sirohydrochlorin cobaltochelatase in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiXSirohydrochlorin cobaltochelatase (298 aa)    
Predicted Functional Partners:
HMPREF9018_0073
TonB-linked outer membrane protein, SusC/RagA family (1032 aa)
 
          0.962
HMPREF9018_0072
SusD family protein (450 aa)
 
          0.915
HMPREF9018_0070
Peptidase M16 inactive domain protein (936 aa)
 
          0.808
HMPREF9018_0075
Leucine Rich Repeat protein (572 aa)
              0.792
HMPREF9018_0069
Uncharacterized protein (290 aa)
 
          0.749
HMPREF9018_1353
Uncharacterized protein (686 aa)
   
          0.627
HMPREF9018_0071
Uncharacterized protein (409 aa)
              0.578
HMPREF9018_0828
Tetratricopeptide repeat protein (228 aa)
   
          0.511
HMPREF9018_1364
Hyaluronoglucosaminidase (654 aa)
   
          0.495
HMPREF9018_1997
Uncharacterized protein (366 aa)
   
          0.493
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (11%) [HD]