STRINGSTRING
HMPREF9018_0089 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0089" - Uncharacterized protein in Prevotella amnii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0089Uncharacterized protein (357 aa)    
Predicted Functional Partners:
HMPREF9018_0184
Uncharacterized protein (454 aa)
   
          0.694
HMPREF9018_0183
Uncharacterized protein (477 aa)
   
          0.660
HMPREF9018_0188
Acyltransferase (353 aa)
   
          0.655
HMPREF9018_0187
Acyltransferase (342 aa)
   
          0.651
HMPREF9018_0892
Tetratricopeptide repeat domain protein (417 aa)
   
          0.596
rplI
50S ribosomal protein L9 ; Binds to the 23S rRNA (174 aa)
              0.578
tsf
Elongation factor Ts ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (332 aa)
   
          0.565
HMPREF9018_0582
Uncharacterized protein (312 aa)
   
          0.551
rpsR
30S ribosomal protein S18 ; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (89 aa)
              0.546
rpsF
30S ribosomal protein S6 ; Binds together with S18 to 16S ribosomal RNA (114 aa)
              0.546
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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