STRINGSTRING
HMPREF9018_0102 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0102" - ThiF family protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0102ThiF family protein (266 aa)    
Predicted Functional Partners:
HMPREF9018_0101
Uncharacterized protein (770 aa)
              0.840
HMPREF9018_1928
ThiF family protein (295 aa)
 
 
0.808
sufS
Cysteine desulfurase ; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine (405 aa)
   
 
  0.731
dnaN
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (374 aa)
   
 
    0.726
sufE
Fe-S metabolism associated domain protein (139 aa)
   
 
    0.707
HMPREF9018_1540
Transcriptional regulator, LuxR family (251 aa)
   
          0.649
HMPREF9018_1122
Uncharacterized protein (238 aa)
   
          0.627
coaBC
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (406 aa)
   
      0.509
HMPREF9018_1953
Uncharacterized protein (381 aa)
   
    0.500
sufB
FeS assembly protein SufB (481 aa)
   
 
    0.488
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (2%) [HD]