STRINGSTRING
HMPREF9018_0134 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0134" - Conjugative transposon TraM protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0134Conjugative transposon TraM protein (439 aa)    
Predicted Functional Partners:
HMPREF9018_0133
Conjugative transposon TraN protein (291 aa)
 
          0.968
HMPREF9018_0136
Conjugative transposon TraK protein (205 aa)
 
          0.938
HMPREF9018_0137
Uncharacterized protein (396 aa)
 
          0.928
HMPREF9018_0128
Peptidase, M23 family (283 aa)
 
          0.914
HMPREF9018_0135
Uncharacterized protein (101 aa)
              0.864
HMPREF9018_0141
Conjugation system ATPase, TraG family (981 aa)
 
          0.848
HMPREF9018_0132
Uncharacterized protein (177 aa)
              0.835
HMPREF9018_0143
Uncharacterized protein (118 aa)
 
          0.808
HMPREF9018_0142
Uncharacterized protein (58 aa)
 
          0.798
HMPREF9018_2077
Uncharacterized protein (724 aa)
 
          0.784
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (7%) [HD]