STRINGSTRING
HMPREF9018_0136 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0136" - Conjugative transposon TraK protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0136Conjugative transposon TraK protein (205 aa)    
Predicted Functional Partners:
HMPREF9018_0137
Uncharacterized protein (396 aa)
 
          0.960
HMPREF9018_0134
Conjugative transposon TraM protein (439 aa)
 
          0.938
HMPREF9018_0133
Conjugative transposon TraN protein (291 aa)
 
          0.937
HMPREF9018_0141
Conjugation system ATPase, TraG family (981 aa)
 
          0.862
HMPREF9018_0128
Peptidase, M23 family (283 aa)
 
          0.862
HMPREF9018_0142
Uncharacterized protein (58 aa)
 
          0.814
HMPREF9018_0143
Uncharacterized protein (118 aa)
 
          0.810
HMPREF9018_2077
Uncharacterized protein (724 aa)
 
          0.788
HMPREF9018_1481
Uncharacterized protein (168 aa)
 
          0.776
HMPREF9018_2076
Putative plasmid recombination enzyme (503 aa)
   
          0.744
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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