STRINGSTRING
HMPREF9018_0178 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0178" - Aminotransferase, class I/II in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0178Aminotransferase, class I/II (388 aa)    
Predicted Functional Partners:
HMPREF9018_0177
Uncharacterized protein (280 aa)
 
          0.920
cysK
Cysteine synthase (315 aa)
       
  0.826
HMPREF9018_1899
Aminotransferase, class I/II (398 aa)
 
   
0.801
HMPREF9018_1935
Xaa-His dipeptidase (486 aa)
       
    0.800
HMPREF9018_0292
Aminotransferase, class I/II (398 aa)
 
   
0.799
luxS
S-ribosylhomocysteine lyase ; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD) (159 aa)
       
  0.797
HMPREF9018_0029
Xaa-His dipeptidase (483 aa)
       
    0.778
coaBC
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (406 aa)
       
    0.774
HMPREF9018_0174
Lactate/malate dehydrogenase, NAD binding domain protein (328 aa)
       
    0.746
HMPREF9018_0181
Putative aspartate ammonia-lyase (472 aa)
       
    0.744
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (8%) [HD]