STRINGSTRING
HMPREF9018_0179 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0179" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0179Uncharacterized protein (213 aa)    
Predicted Functional Partners:
HMPREF9018_1878
Uncharacterized protein (336 aa)
   
          0.759
HMPREF9018_2004
Uncharacterized protein (261 aa)
   
          0.719
HMPREF9018_0262
Outer membrane protein transport protein, Ompp1/FadL/TodX family (435 aa)
   
          0.717
HMPREF9018_1177
Uncharacterized protein (172 aa)
   
          0.704
HMPREF9018_0830
Uncharacterized protein (408 aa)
   
          0.680
mreD
Rod shape-determining protein MreD (166 aa)
   
          0.678
HMPREF9018_1708
7TM receptor with intracellular HD hydrolase (689 aa)
   
          0.653
HMPREF9018_0836
Uncharacterized protein (355 aa)
   
          0.627
HMPREF9018_0894
Uncharacterized protein (387 aa)
   
          0.618
HMPREF9018_0833
Tetratricopeptide repeat protein (861 aa)
   
          0.618
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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